52. Doosey MH, Bart HLJr, Saitoh K, Miya M. 2010. Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences. Mol Phylogenet Evol 54:1028-1034.

51. Tanaka N, Aida S, Akaike S, Aramaki H, Chiyokubo T, Chow S, Fujii A, Fujiwara M, Ikeuchi H, Ishii M, Ishikawa R, Ito H, Kudo T, Muraoka D, Nagahama T, Nambu T, Okumura H, Oshino A, Saigusa M, Shimizu Y, Suwa T, Suzuki K, Takeda K, Tanada N, Tanimoto T, Tsuda F, Urabe S, Yatsuya K, Yoshida G, Yoshimatsu T, Yoshimitsu S, Yoshimura K, Morita K, Saitoh K. 2009. Distribution of Zostera species in Japan. I Zostera marina L. (Zosteraceae). Bull Natl Mus Nat Sci [B] 35:23-40.

50. Mayden RL, Chen W-J, Bart HL, Doosey MH, Simons AM, Tang KL, Wood RM, Agnew MK, Yang L, Hirt MV, Clements MD, Saitoh K, Sado T, Miya M, Nishida M. 2009. Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes - order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome. Mol Phylogenet Evol 51:500-514.

49. Saitoh K, Uehara S, Tega T. 2009. Genetic identification of fish eggs collected in Sendai Bay and off Johban, Japan. Ichthyol Res 56:200-203.

48. Kawamura K, Yonekura R, Katano O, Taniguchi T, Saitoh K. 2009. Phylogeography of the bluegill sunfish, Lepomis macrochirus, in the Mississippi River Basin. Zool Sci 26:24-34.

47. Chen W-J, Miya M, Saitoh K, Mayden RL. 2008. Phylogenetic utility of two existing and four novel nuclear loci in reconstructing tree of life of ray-finned fishes: the order Cypriniformes (Ostariophysi) as a case study. Gene 423:125-134.

46. Saitoh K, Chen W-J. 2008. Reducing cloning artifacts for recovery of allelic sequences by T7 endonuclease I cleavage and single re-extension of PCR products -- A benchmark. Gene 423:92-95.

45. Mayden RL, Tang KL, Wood RM, Chen W-J, Agnew M, Conway KW, Yang L, Simons AM, Bart HL, Harris PM, Li J, Wang Z, Saitoh K, He S, Liu H, Chen Y, Nishida M, Miya M. 2008. Inferring the tree of life of the order Cypriniformes, the earth's most diverse clade of freshwater fishes: Implications of varied taxon and character sampling. J Syst Evol 46:424-438.

44. Sekino M, Saitoh K, Aritaki M. 2008. Microsatellite markers for a rare species of right-eye flounder Verasper variegatus (Pleuronectiformes, Pleuronectidae). Conserv Genet 9:761-765.

43. Mayden RL, Tang KL, Conway KW, Freyhof J, Chamberlain J, Haskins M, Schneider L, Sudkamp M, Wood RM, Agnew M, Bufalino A, Sulaiman Z, Miya M, Saitoh K, He S. 2007. Phylogenetic relationships of Danio within the order Cypriniformes: A framework for comparative and evolutionary studies of a model species. J Exp Zool 308B:642-654.

42. Shigenobu Y, Hayashizaki K, Asahida T, Ida H, Saitoh K. 2007. Stock structure of Japanese flounder inferred from morphological and genetic analyses. Fish Sci 73:1104-1112.

41. Saitoh K, Kawagishi M, Shindo K. 2007. Acheilognathus tabira from Natori Basin, Miyagi, Japan produces elliptical eggs and their juveniles do not have a dark spot on the dorsal fin. Izunuma-Uchinuma Wetland Researches 1:1-5.

40. Lavoue S, Miya M, Saitoh K, Ishiguro NB, Nishida M. 2007. Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Mol Phylogenet Evol 43:1096-1105.

39. Saitoh K, Sado T, Mayden RL, Hanzawa N, Nakamura K, Nishida M, Miya M. 2006. Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): The first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences. J Mol Evol 63:826-841.

38. Saitoh K, Muraoka D. 2006. Undaria mitochondrial large subunit ribosomal DNAs (Phaeophyceae, Alariaceae): Structural properties and use for phylogenetic analysis. Phycol Res 54:149-153.

37. Miya M, Saitoh K, Wood R, Nishida M, Mayden RL. 2006. New primers for amplifying and sequencing the mitochondrial ND4/ND5 gene region of the Cypriniformes (Actinopterygii: Ostariophysi). Ichthyol Res 53:75-81.

36. Kawamura K, Yonekura R, Katano O, Taniguchi Y, Saitoh K. 2006. Origin and dispersal of bluegill sunfish, Lepomis macrochirus, in Japan and Korea. Mol Ecol 15:613-621.

35. Muraoka D, Saitoh K. 2005. Identification of Undaria pinnatifida and Undaria undarioides (Laminariales, Phaeophyceae) using mitochondrial 23S ribosomal DNA sequences. Fish Sci 71:1365-1369.

34. Shigenobu Y, Saitoh K, Hayashizaki K, Ida H. 2005. Nonsynonymous site heteroplasmy in fish mitochondrial DNA. Gene Genet Syst 80:297-301.

33. Lavoue S, Miya M, Inoue JG, Saitoh K, Ishiguro NB, Nishida M. 2005. Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: Implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol 37:165-177.

32. Sekino M, Saitoh K, Yamada T, Hara M, Yamashita Y. 2005. Genetic tagging of released Japanese flounder (Paralichthys olivaceus) based on polymorphic DNA markers. Aquaculture 244:49-61.

31. Asahida T, Shinotsuka Y, Saitoh K, Tsuzuki T, Aritaki M, Yamashita Y. 2004. Parental contributions in a Japanese flounder hatchery inferred from mitochondrial DNA haplotypes. J World Aquacult Soc 35:199-208.

30. Saitoh K, Kim I-S, Lee E-H. 2004. Mitochondrial gene introgression between spined loaches via hybridogenesis. Zool Sci 21:795-798.

29. Saitoh K. 2003. Techniques in surveying organisms for agricultural engineers (7) - Field study of freshwater fishes -. J JSIDRE (J Jpn Soc Irrig Drain Rural Eng) 71:241-245.

28. Saitoh K. 2003. Mitotic and meiotic analyses of the 'large race' of Cobitis striata, a polyploid spined loach of hybrid origin. Folia Biol (Krakow) 51(Suppl):101-105.

27. Asahida T, Shinotsuka Y, Yamashita Y, Saitoh K, Hayashizaki K, Ida H. 2003. Influence of hatchery protocols on mitochondrial DNA variation in Japanese flounder juveniles. J World Aquacult Soc 34:121-132.

26. Sekino M, Saitoh K, Yamada T, Kumagai A, Hara M, Yamashita Y. 2003. Microsatellite-based pedigree tracing in a Japanese flounder Paralichthys olivaceus hatchery strain: implications for hatchery management related to stock enhancement program. Aquaculture 221:255-263.

25. Saitoh K, Miya M, Inoue JG, Ishiguro NB, Nishida M. 2003. Mitochondrial genomics of ostariophysan fishes: Perspectives on phylogeny and biogeography. J Mol Evol 56:464-472.

24. Saitoh K, Takagaki M, Yamashita Y. 2003. Detection of Japanese flounder-specific DNAs from gut contents of potential predators in the field. Fish Sci 69:473-477.

23. Kawamura K, Ueda T, Arai R, Nagata Y, Saitoh K, Ohtaka H, Kanoh Y. 2001. Genetic introgression by the rose bitterling, Rhodeus ocellatus ocellatus, into the Japanese rose bitterling, R. o. kurumeus (Teleostei: Cyprinidae). Zool Sci 18:1027-1039.

22. Saitoh K, Kobayashi T, Asahida T, Hayashizaki K, Yokoyama Y, Toyohara H, Yamashita Y. 2001. Sequence and structure of Japanese flounder (Paralichthys olivaceus) mitochondrial genome. Bull Tohoku Natl Fish Res Inst 64:1-36.

21. Mizuno M, Kobayashi T, Matsuishi T, Maeda K, Saitoh K. 2000. Stock structure of walleye pollock, Theragra chalcogramma, around Hokkaido and Sakhalin in the term of mitochondrial DNA RFLP. Sci Rep Hokkaido Fish Exp Stn 57:1-8.

20. Saitoh K, Ueda T, Arai R, Wu H-L, Jeon S-R. 2000. Highly repetitive elements from Chinese bitterlings (genus Rhodeus, Cyprinidae). Gene Genet Syst 75:349-355.

19. Saitoh K. 2000. Sumio Minamori: the pioneer of loach speciation study. Folia Zool 49(S1):249-252.

18. Saitoh K, Kobayashi T, Ueshima R, Numachi K. 2000. Analyses of mitochondrial and satellite DNAs on spined loaches of the genus Cobitis from Japan have revealed relationships among populations of three diploid-tetraploid complexes. Folia Zool 49(S1):9-16.

17. Saitoh K, Bohlen J, Rab P. 2000. Preface. Folia Zool 49(S1):2.

16. Saitoh K, Hayashizaki K, Yokoyama Y, Asahida T, Toyohara H, Yamashita Y. 2000. Complete nucleotide sequence of Japanese flounder (Paralichthys olivaceus) mitochondrial genome: structural properties and cue for resolving teleostean relationships. J Hered 91:271-278.

15. Saitoh K. 1998. Genetic variation and local differentiation in the Pacific cod Gadus macrocephalus around Japan reveald by mtDNA and RAPD markers. Fish Sci 64:673-679.

14. Asahida T, Saitoh K, Yamashita Y, Aonuma Y, Kobayashi T. 1998. Genetic variation in the Japanese flounder based on analysis of mitochondrial DNA by restriction endonucleases. Nipp Suis Gakk 64:377-383.

13. Asahida T, Kobayashi T, Saitoh K, Nakayama I. 1996. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish Sci 62:727-730.

12. Saitoh K, Tanaka M, Ueshima R, Kamaishi T, Kobayashi T, Numachi K. 1995. Preliminary data on restriction mapping and detection of length variation in Japanese flounder mitochondrial DNA. Aquaculture 136:109-116.

11. Saitoh K. 1993. Smaller races and the large race of the striated spined loach are threatened. Jpn J Ichthyol 40:394-397.

10. Saitoh K, Matsuda M. 1990. An introduction to the spined loaches in the Lake Biwa basin. Ann Rep Biwako Bunkakan 8:19-23.

9. Saitoh K. 1990. Reproductive and habitat isolation between two populations of the striated spined loach. Env Biol Fish 28:237-248.

8. Matsuda M, Satioh K. 1989. Karyotype of a Japanese cyprinid fish, Aphyocypris chinensis. Ann Rep Biwako Bunkakan 7:21-23.

7. Saitoh K. 1989. Multiple sex chromosome system in a loach fish. Cytogenet Cell Genet 52:62-64.

6. Saitoh K, Fujikawa H, Nagata Y. 1988. Akahiretabira, Acheilognathus tabira subsp.(a) collected in Ohara River, Ohda, Shimane Prefecture, Japan. Bull Biogeogr Soc Jpn 43:57-60.

5. Katano O, Saitoh K, Koizumi A. 1988. Scatter-spawning of the catfish, Silurus asotus. Jpn J Ichthyol 35:203-211.

4. Saitoh K, Katano O, Koizumi A. 1988. Movement and spawning of several freshwater fishes in temporary waters around paddy fields. Jpn J Ecol 38:35-47.

3. Saitoh K, Aizawa H. 1987. Local differentiation within the striated spined loach (the striata type of Cobitis taenia complex). Jpn J Ichthyol 34:334-345.