#!/usr/bin/csh
# consed.bat
#
# run on csh.
# put this script in the parent folder of project folders.
#
# name of the program or script to run the program should be "consed"
#
echo "Input folder name (quit = RETURN)  "
# set i = $< # input from keyboard to i
set i = $<
# ($i !="") # $i not equal to ""
while ($i !="")
   cd $i/edit_dir
   phredPhrap
   consed
   cd ../../
   echo $i "...done"
   echo "Input folder name (quit = RETURN)  "
   set i = $<
end